Mack, K.L., Ballinger, M.A., Phifer-Rixey, M., and M.W. Nachman. 2018. Gene regulation underlies environmental adaptation in house mice. Genome Research.

Phifer-Rixey, M., Bi, K., Ferris, K.G., Sheehan, M.J., Lin, D., Mack, K.L., Keeble, S.M., Suzuki, T., Good, J.M., and M.W. Nachman. 2018. The genomic basis of environmental adaptation in house mice. PLoS Genetics.

Weyand, N., Ma, I., Phifer-Rixey, M., et al. 2016 Isolation of a new species of Neisseria from the wild house mouse, Mus musculus. International Journal of Systematic and Evolutionary Microbiology. 66(9):3585-3593.

Phifer-Rixey, M. and M. W. Nachman. 2015. The natural history of model organisms: Insight into mammalian biology from the wild house mouse, Mus musculus. eLife.

Phifer-Rixey, M. 2014. Evolution: Searching for the genes that separate species (invited commentary). eLife.

Phifer-Rixey, M., Bomhoff, M., and M.W. Nachman. 2014 Genome-wide patterns of differentiation among house mouse subspecies. Genetics. 198(1):283-297.

Phifer-Rixey, M., Bonhomme, F., Boursot, P., Churchill, G.A., Pialek, J., Tucker, P., and M.W. Nachman. 2012 Adaptive evolution and effective population size in wild house mice. Molecular Biology and Evolution. 29(10):2949-2955.

Phifer-Rixey, M., Heckman, M., Trussell, G. and P.S. Schmidt. 2009 Maintenance of clinal variation for shell colour phenotype in the flat periwinkle Littorina obtusata. Journal of Evolutionary Biology. 21(4):966-978.

Schmidt, P.S., Phifer-Rixey, M., Taylor, G.M. and J. Christner. 2007 Genetic heterogeneity among intertidal habitats in the flat periwinkle, Littorina obtusata. Molecular Ecology. 16(11):2393-2404.